Information about the Raw Data

The size of LC-MS/MS raw data in the proteomic data set is ~250 MB per run.

The size of LC-MS raw data in the glycomic data set is ~500 MB per run.

Please use "Save-As" function when downloading these data.

The index of LC-MS runs in the MATLAB codes/data as well as peak lists input to SIMA is based on the analysis order.

Proteomics Data Set

Analysis order (20 LC-MS/MS runs):

hr_g3c_ft_1.raw >> hr_g3d_ft_1.raw >> hr_g4d_ft_1.raw >> hr_g4b_ft_1.raw >> hr_g3e_ft_1.raw >> hr_g3b_ft_1.raw >> hr_g4c_ft_1.raw >> hr_g4a_ft_1.raw >> hr_g4e_ft_1.raw >> hr_g3a_ft_1.raw >> hr_g3a_ft_2.raw >> hr_g4e_ft_2.raw >> hr_g4a_ft_2.raw >> hr_g4c_ft_2.raw >> hr_g3b_ft_2.raw >> hr_g3e_ft_2.raw >> hr_g4b_ft_2.raw >> hr_g4d_ft_2.raw >> hr_g3d_ft_2.raw >> hr_g3c_ft_2.raw

Mixture of internal standard:

hr_g1_int_std_1.raw, hr_g1_int_std_2.raw

Glycomics Data Set

Analysis order (23 LC-MS runs):

b3_64_2.raw >> b3_49_2.raw >> b3_48_2.raw >> b3_61_2.raw >> b3_54_2.raw >> b3_63_2.raw >> b3_66_2.raw >> b3_65_2.raw >> b3_56_2.raw >> b3_67_2.raw >> b3_70_2.raw >> b3_51_2.raw >> b3_52_2.raw >> b3_53_2.raw >> b3_50_2.raw >> b3_69_2.raw >> b3_62_2.raw >> b3_55_2.raw >> b3_58_2.raw >> b3_57_2.raw >> b3_60_2.raw >> b3_59_2.raw >> b3_68_2.raw

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